› 3uwa

X-ray diffraction
1.95Å resolution

Crystal structure of a probable peptide deformylase from synechococcus phage S-SSM7

Released:
DOI: 10.2210/pdb3uwa/pdb
PDB entry 3uwa coloured by chain, front view.
PDB entry 3uwa coloured by chain, side view.
PDB entry 3uwa coloured by chain, top view.
Source organism: Synechococcus phage S-SSM7
Primary publication:
Structure and function of a cyanophage-encoded peptide deformylase.
Frank JA, Lorimer D, Youle M, Witte P, Craig T, Abendroth J, Rohwer F, Edwards RA, Segall AM, Burgin AB
ISME J 7 1150-60 (2013)
PMID: 23407310

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122906 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
RIIA-RIIB membrane-associated protein Chain: A
Molecule details ›
Chain: A
Length: 154 amino acids
Theoretical weight: 17.84 KDa
Source organism: Synechococcus phage S-SSM7
Expression system: Escherichia coli
UniProt:
  • Canonical: E3SLL2 (Residues: 1-128; Coverage: 100%)
Gene name: SSSM7_299
Sequence domains: Polypeptide deformylase
Structure domains: Peptide deformylase

Ligands and Environments

2 bound ligands:
Ligand ZN 1 x ZN
Ligand MRD 2 x MRD
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 47.46Å b: 58.63Å c: 62.39Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.177 0.176 0.207
Expression system: Escherichia coli

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Citations

5 review citations

N-terminal protein modifications: Bringing back into play the ribosome.
Giglione et al. (2015)
4 more

2 mentions without citation

A Review on Viral Metagenomics in Extreme Environments.
Dávila-Ramos et al. (2019)
1 more