› 3vcc

X-ray diffraction
1.64Å resolution

CRYSTAL STRUCTURE OF D-Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg

Released:
DOI: 10.2210/pdb3vcc/pdb
PDB entry 3vcc coloured by chain, front view.
PDB entry 3vcc coloured by chain, side view.
PDB entry 3vcc coloured by chain, top view.
Source organism: Paenibacillus sp. Y412MC10
Entry authors: Fedorov AA, Fedorov EV, Groninger-Poe F, Gerlt JA, Almo SC

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-112470 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Mandelate racemase/muconate lactonizing enzyme C-terminal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 392 amino acids
Theoretical weight: 43.92 KDa
Source organism: Paenibacillus sp. Y412MC10
Expression system: Escherichia coli
UniProt:
  • Canonical: D3EID5 (Residues: 2-382; Coverage: 100%)
Gene name: GYMC10_3367
Sequence domains: Enolase C-terminal domain-like
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand MG 4 x MG
Ligand PEG 1 x PEG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: C2
Unit cell:
a: 154.347Å b: 65.985Å c: 75.636Å
α: 90° β: 93.56° γ: 90°
R-values:
R R work R free
0.181 0.179 0.216
Expression system: Escherichia coli

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