› 3vdi

X-ray diffraction
1.99Å resolution

Structure of the FMO protein from Pelodictyon phaeum

Released:
DOI: 10.2210/pdb3vdi/pdb
PDB entry 3vdi coloured by chain, front view.
PDB entry 3vdi coloured by chain, side view.
PDB entry 3vdi coloured by chain, top view.
Source organism: Pelodictyon phaeum
Primary publication:
Reinterpretation of the electron density at the site of the eighth bacteriochlorophyll in the FMO protein from Pelodictyon phaeum.
Tronrud DE, Allen JP
Photosynth Res 112 71-4 (2012)
PMID: 22457093

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-164178 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
bacteriochlorophyll A protein Chain: A
Molecule details ›
Chain: A
Length: 367 amino acids
Theoretical weight: 40.62 KDa
Source organism: Pelodictyon phaeum
Structure domains: Bacteriochlorophyll A

Ligands and Environments

2 bound ligands:
Ligand BCL 7 x BCL
Ligand PG4 4 x PG4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P63
Unit cell:
a: 83.967Å b: 83.967Å c: 115.724Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.164 0.162 0.19

Quick links

Citations

2 citation in other articles

Excitation energy transfer pathways in light-harvesting proteins: Modeling with PyFREC.
Kholod et al. (2018)
1 more

2 mentions without citation

The solvent component of macromolecular crystals.
Weichenberger et al. (2015)
1 more