› 3vh1

X-ray diffraction
3Å resolution

Crystal structure of Saccharomyces cerevisiae Atg7 (1-595)

Released:
DOI: 10.2210/pdb3vh1/pdb
PDB entry 3vh1 coloured by chain, front view.
PDB entry 3vh1 coloured by chain, side view.
PDB entry 3vh1 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Noda NN, Satoo K, Fujioka Y, Kumeta H, Ogura K, Nakatogawa H, Ohsumi Y, Inagaki F
Mol Cell 44 462-75 (2011)
PMID: 22055191

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153753 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin-like modifier-activating enzyme ATG7 Chain: A
Molecule details ›
Chain: A
Length: 598 amino acids
Theoretical weight: 67.75 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: P38862 (Residues: 1-595; Coverage: 94%)
Gene names: APG7, ATG7, CVT2, YHR171W
Sequence domains:
Structure domains: NAD(P)-binding Rossmann-like Domain

Ligands and Environments

1 bound ligand:
Ligand ZN 2 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P3121
Unit cell:
a: 88.327Å b: 88.327Å c: 264.89Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.219 0.216 0.25
Expression system: Escherichia coli

Quick links

Citations

34 review citations

The machinery of macroautophagy.
Feng et al. (2014)
33 more

3 mentions without citation

Modeling Structure and Dynamics of Protein Complexes with SAXS Profiles.
Schneidman-Duhovny et al. (2018)
2 more