› 3vqf

X-ray diffraction
1.2Å resolution

Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein

Released:
DOI: 10.2210/pdb3vqf/pdb
PDB entry 3vqf coloured by chain, front view.
PDB entry 3vqf coloured by chain, side view.
PDB entry 3vqf coloured by chain, top view.
Source organism: Mus musculus
Entry authors: Akiyoshi Y, Hamada D, Goda N, Tenno T, Narita H, Nakagawa A, Furuse M, Suzuki M, Hiroaki H

Function and Biology Details

Reaction catalysed: 
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-130687 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase LNX Chain: A
Molecule details ›
Chain: A
Length: 94 amino acids
Theoretical weight: 10.39 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: O70263 (Residues: 381-467; Coverage: 12%)
Gene names: Lnx, Lnx1
Sequence domains: PDZ domain
Structure domains: Pdz3 Domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: C2
Unit cell:
a: 60.493Å b: 51.21Å c: 33.291Å
α: 90° β: 120° γ: 90°
R-values:
R R work R free
0.146 0.145 0.164
Expression system: Escherichia coli

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