› 3wo9

X-ray diffraction
2.3Å resolution

Crystal structure of the lamprey variable lymphocyte receptor C

Released:
DOI: 10.2210/pdb3wo9/pdb
PDB entry 3wo9 coloured by chain, front view.
PDB entry 3wo9 coloured by chain, side view.
PDB entry 3wo9 coloured by chain, top view.
Source organism: Lethenteron camtschaticum
Primary publication:
Crystal structure of the lamprey variable lymphocyte receptor C reveals an unusual feature in its N-terminal capping module.
Kanda R, Sutoh Y, Kasamatsu J, Maenaka K, Kasahara M, Ose T
PLoS One 9 e85875 (2014)
PMID: 24465760

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122673 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
LRRNT domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 248 amino acids
Theoretical weight: 27.54 KDa
Source organism: Lethenteron camtschaticum
Expression system: Escherichia coli
UniProt:
  • Canonical: E0D2V6 (Residues: 25-246; Coverage: 74%)
Gene name: VLRC
Sequence domains: Leucine rich repeat

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: P21212
Unit cell:
a: 102.157Å b: 37.229Å c: 55.133Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.184 0.181 0.238
Expression system: Escherichia coli

Quick links

Citations

5 review citations

Evolution of Alternative Adaptive Immune Systems in Vertebrates.
Boehm et al. (2018)
4 more

3 mentions without citation

Evolution of two prototypic T cell lineages.
Das et al. (2015)
2 more