› 3wvf

X-ray diffraction
3.2Å resolution

Crystal structure of YidC from Escherichia coli

Released:
DOI: 10.2210/pdb3wvf/pdb
PDB entry 3wvf coloured by chain, front view.
PDB entry 3wvf coloured by chain, side view.
PDB entry 3wvf coloured by chain, top view.
Source organism: Escherichia coli UTI89
Primary publication:
Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase.
Kumazaki K, Kishimoto T, Furukawa A, Mori H, Tanaka Y, Dohmae N, Ishitani R, Tsukazaki T, Nureki O
Sci Rep 4 7299 (2014)
PMID: 25466392

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-173036 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Membrane protein insertase YidC Chains: A, B
Molecule details ›
Chains: A, B
Length: 551 amino acids
Theoretical weight: 61.87 KDa
Source organism: Escherichia coli UTI89
Expression system: Escherichia coli
UniProt:
  • Canonical: Q1R4M9 (Residues: 1-540; Coverage: 99%)
Gene names: UTI89_C4258, yidC
Sequence domains:
Structure domains: Beta-galactosidase; Chain A, domain 5

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL32XU
Spacegroup: P1
Unit cell:
a: 42.729Å b: 76.011Å c: 91.318Å
α: 78.08° β: 82.45° γ: 77.55°
R-values:
R R work R free
0.227 0.221 0.277
Expression system: Escherichia coli

Quick links

Citations

23 review citations

Computational Methodologies for Real-Space Structural Refinement of Large Macromolecular Complexes.
Goh et al. (2016)
22 more

14 mentions without citation

YidC/Alb3/Oxa1 Family of Insertases.
Hennon et al. (2015)
13 more