3zdm

X-ray diffraction
1.8Å resolution

Crystal structure of the Sgt2 N domain and the Get5 UBL domain complex

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
PDBe Complex ID:
PDB-CPX-171299 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Small glutamine-rich tetratricopeptide repeat-containing protein 2 Chains: A, B, D, E
Molecule details ›
Chains: A, B, D, E
Length: 72 amino acids
Theoretical weight: 7.72 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q12118 (Residues: 1-72; Coverage: 21%)
Gene names: SGT2, UNF346, YOR007C
Sequence domains: Homodimerisation domain of SGTA
Structure domains: Immunoglobulin FC, subunit C
Ubiquitin-like protein MDY2 Chains: C, F
Molecule details ›
Chains: C, F
Length: 81 amino acids
Theoretical weight: 9.05 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q12285 (Residues: 71-151; Coverage: 38%)
Gene names: GET5, MDY2, TMA24, YOL111C
Sequence domains: Ubiquitin family
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: C2
Unit cell:
a: 137.109Å b: 34.127Å c: 92.092Å
α: 90° β: 105.84° γ: 90°
R-values:
R R work R free
0.189 0.187 0.226
Expression system: Escherichia coli BL21