› 3zx9

Electron Microscopy
17Å resolution

Cryo-EM reconstruction of native and expanded Turnip Crinkle virus

Released:
DOI: 10.2210/pdb3zx9/pdb
PDB entry 3zx9 coloured by chain, front view.
PDB entry 3zx9 coloured by chain, side view.
PDB entry 3zx9 coloured by chain, top view.
Source organism: Turnip crinkle virus
Primary publication:
Isolation of an asymmetric RNA uncoating intermediate for a single-stranded RNA plant virus.
Bakker SE, Ford RJ, Barker AM, Robottom J, Saunders K, Pearson AR, Ranson NA, Stockley PG
J Mol Biol 417 65-78 (2012)
PMID: 22306464
Related structures: EMD-1864

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-139126 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 347 amino acids
Theoretical weight: 37.76 KDa
Source organism: Turnip crinkle virus
UniProt:
  • Canonical: P06663 (Residues: 1-351; Coverage: 99%)
Gene name: ORF4
Sequence domains: Viral coat protein (S domain)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 17Å
Relevant EMDB volumes: EMD-1864

Quick links

Citations

4 review citations

Cis-acting RNA elements in positive-strand RNA plant virus genomes.
Newburn et al. (2015)
3 more

1 mention without citation

Isolation of an asymmetric RNA uncoating intermediate for a single-stranded RNA plant virus.
Bakker et al. (2012)