› 405d

X-ray diffraction
2.5Å resolution

STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES

Released:
DOI: 10.2210/pdb405d/pdb
PDB entry 405d coloured by chain, front view.
PDB entry 405d coloured by chain, side view.
PDB entry 405d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of a 16-mer RNA duplex r(GCAGACUUAAAUCUGC)2 with wobble C.A+ mismatches.
Pan B, Mitra SN, Sundaralingam M
J Mol Biol 283 977-84 (1998)
PMID: 9799637

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196759 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 16 nucleotides
Theoretical weight: 5.08 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: R3
Unit cell:
a: 42.56Å b: 42.56Å c: 124.05Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.17 0.17 0.289
Expression system: Not provided

Quick links

Citations

3 review citations

Stitching together RNA tertiary architectures.
Hermann et al. (1999)
2 more

7 mentions without citation

Structure and function of OprD protein in Pseudomonas aeruginosa: from antibiotic resistance to novel therapies.
Li et al. (2012)
6 more