› 422d

X-ray diffraction
2.6Å resolution

5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3'

Released:
DOI: 10.2210/pdb422d/pdb
PDB entry 422d coloured by chain, front view.
PDB entry 422d coloured by chain, side view.
PDB entry 422d coloured by chain, top view.
Source organism: Unidentified
Primary publication:
Structure of the dodecamer r(GAUCACUUCGGU) with four 5'-overhang nucleotides.
Eswaramoorthy S, Rao ST, Pan B, Sundaralingam M
Acta Crystallogr D Biol Crystallogr 60 8-12 (2004)
PMID: 14684886

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196764 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.79 KDa
Source organism: Unidentified
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: C2
Unit cell:
a: 71.34Å b: 39.98Å c: 32.47Å
α: 90° β: 104.7° γ: 90°
R-values:
R R work R free
0.188 0.188 0.188
Expression system: Not provided

Quick links

Citations

1 citations in other articles

Molecular dynamics simulation (MDS) analysis of Vibrio cholerae ToxT virulence factor complexed with docked potential inhibitors.
Torktaz et al. (2018)

1 mention without citation

Develop and test a solvent accessible surface area-based model in conformational entropy calculations.
Wang et al. (2012)