› 431d

X-ray diffraction
1.15Å resolution

5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3'

Released:
DOI: 10.2210/pdb431d/pdb
PDB entry 431d coloured by chain, front view.
PDB entry 431d coloured by chain, side view.
PDB entry 431d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
B-DNA at atomic resolution reveals extended hydration patterns.
Vlieghe D, Turkenburg JP, Van Meervelt L
Acta Crystallogr D Biol Crystallogr 55 1495-502 (1999)
PMID: 10489444

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-117144 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 3.09 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 2 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ELETTRA BEAMLINE 5.2R
Spacegroup: P212121
Unit cell:
a: 26.106Å b: 36.455Å c: 52.559Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.172 not available not available
Expression system: Not provided

Quick links

Citations

5 review citations

Water Dynamics in the Hydration Shells of Biomolecules.
Laage et al. (2017)
4 more

6 mentions without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)
5 more