› 439d

X-ray diffraction
1.6Å resolution

5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3'

Released:
DOI: 10.2210/pdb439d/pdb
PDB entry 439d coloured by chain, front view.
PDB entry 439d coloured by chain, side view.
PDB entry 439d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of an RNA duplex with an unusual G.C pair in wobble-like conformation at 1.6 A resolution.
Perbandt M, Vallazza M, Lippmann C, Betzel C, Erdmann VA
Acta Crystallogr D Biol Crystallogr 57 219-24 (2001)
PMID: 11173467

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196772 (preferred)
Entry contents:
2 distinct RNA molecules
Macromolecules (2 distinct):
RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*G)-3') Chain: A
Molecule details ›
Chain: A
Length: 8 nucleotides
Theoretical weight: 2.6 KDa
Source organism: Synthetic construct
Expression system: Not provided
RNA (5'-R(*CP*CP*GP*CP*CP*UP*GP*G)-3') Chain: B
Molecule details ›
Chain: B
Length: 8 nucleotides
Theoretical weight: 2.52 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand BA 1 x BA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ELETTRA BEAMLINE 5.2R
Spacegroup: R32
Unit cell:
a: 41.969Å b: 41.969Å c: 127.137Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.224 0.224 0.271
Expression system: Not provided

Quick links

Citations

1 review citation

5 S rRNA: structure and interactions.
Szymański et al. (2003)
6 other articles

4 mentions without citation

Mutations in the v-Rel transactivation domain indicate altered phosphorylation and identify a subset of NF-kappaB-regulated cell death inhibitors important for v-Rel transforming activity.
Rayet et al. (2003)
3 more