4a20

X-ray diffraction
1.78Å resolution

Crystal structure of the Ubl domain of Mdy2 (Get5) at 1.78A

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-171330 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin-like protein MDY2 Chain: A
Molecule details ›
Chain: A
Length: 98 amino acids
Theoretical weight: 11.12 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q12285 (Residues: 70-152; Coverage: 39%)
Gene names: GET5, MDY2, TMA24, YOL111C
Sequence domains: Ubiquitin family
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P3221
Unit cell:
a: 47.19Å b: 47.19Å c: 78.41Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.203 0.201 0.248
Expression system: Escherichia coli BL21(DE3)