› 4akd

X-ray diffraction
2.1Å resolution

High resolution structure of Mannose Binding lectin from Champedak (CMB)

Released:
DOI: 10.2210/pdb4akd/pdb
PDB entry 4akd coloured by chain, front view.
PDB entry 4akd coloured by chain, side view.
PDB entry 4akd coloured by chain, top view.
Source organism: Artocarpus integer
Primary publication:
Structures and binding specificity of galactose- and mannose-binding lectins from champedak: differences from jackfruit lectins.
Gabrielsen M, Abdul-Rahman PS, Othman S, Hashim OH, Cogdell RJ
Acta Crystallogr F Struct Biol Commun 70 709-16 (2014)
PMID: 24915077

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181695 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Jacalin-type lectin domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 150 amino acids
Theoretical weight: 16.18 KDa
Source organism: Artocarpus integer
UniProt:
  • Canonical: Q7M1T4 (Residues: 1-149; Coverage: 100%)
Sequence domains: Jacalin-like lectin domain
Structure domains: Jacalin-like lectin domain

Ligands and Environments

2 bound ligands:
Ligand CD 8 x CD
Ligand CL 7 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P212121
Unit cell:
a: 76.887Å b: 86.222Å c: 95.373Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.196 0.193 0.236

Quick links

Citations

1 review citation

Overview of the Structure⁻Function Relationships of Mannose-Specific Lectins from Plants, Algae and Fungi.
Barre et al. (2019)
5 other articles

2 mentions without citation

Structures and binding specificity of galactose- and mannose-binding lectins from champedak: differences from jackfruit lectins.
Gabrielsen et al. (2014)
1 more