› 4avt

X-ray diffraction
3.2Å resolution

Structure of CPHPC bound to Serum Amyloid P Component

Released:
DOI: 10.2210/pdb4avt/pdb
PDB entry 4avt coloured by chain, front view.
PDB entry 4avt coloured by chain, side view.
PDB entry 4avt coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Interaction of serum amyloid P component with hexanoyl bis(D-proline) (CPHPC).
Kolstoe SE, Jenvey MC, Purvis A, Light ME, Thompson D, Hughes P, Pepys MB, Wood SP
Acta Crystallogr D Biol Crystallogr 70 2232-40 (2014)
PMID: 25084341

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136123 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Serum amyloid P-component Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 204 amino acids
Theoretical weight: 23.28 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P02743 (Residues: 20-223; Coverage: 100%)
Gene names: APCS, PTX2
Sequence domains: Pentaxin family
Structure domains: Jelly Rolls

Ligands and Environments

3 bound ligands:
Ligand CA 20 x CA
Ligand NAG 10 x NAG
Ligand GHE 5 x GHE
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-3
Spacegroup: P43212
Unit cell:
a: 230.864Å b: 230.864Å c: 281.393Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.189 0.189 0.197

Quick links

Citations

1 review citation

Sialic acid as a target for the development of novel antiangiogenic strategies.
Chiodelli et al. (2018)
3 other articles

2 mentions without citation

Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions.
Franke et al. (2018)
1 more