› 4bml

Electron Microscopy
4.7Å resolution

C-alpha backbone trace of major capsid protein gp39 found in marine virus Syn5.

Released:
DOI: 10.2210/pdb4bml/pdb
PDB entry 4bml coloured by chain, front view.
PDB entry 4bml coloured by chain, side view.
PDB entry 4bml coloured by chain, top view.
Source organism: Synechococcus virus Syn5
Primary publication:
Protruding knob-like proteins violate local symmetries in an icosahedral marine virus.
Gipson P, Baker ML, Raytcheva D, Haase-Pettingell C, Piret J, King JA, Chiu W
Nat Commun 5 4278 (2014)
PMID: 24985522
Related structures: EMD-5954

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 420-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107530 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid Gp10A/Gp10B-like domain-containing protein Chains: A, B, C, D, E, F, G
Molecule details ›
Chains: A, B, C, D, E, F, G
Length: 332 amino acids
Theoretical weight: 35.11 KDa
Source organism: Synechococcus virus Syn5
UniProt:
  • Canonical: A4ZRC0 (Residues: 1-332; Coverage: 100%)
Gene name: 39
Sequence domains: Major capsid protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.7Å
Relevant EMDB volumes: EMD-5954

Quick links

Citations

2 review citations

Nature's favorite building block: Deciphering folding and capsid assembly of proteins with the HK97-fold.
Suhanovsky et al. (2015)
1 more

2 mentions without citation

AlphaFold2 and CryoEM: Revisiting CryoEM modeling in near-atomic resolution density maps.
Hryc et al. (2022)
1 more