› 4dmt

X-ray diffraction
1.39Å resolution

Crystal structure of a VWF binding collagen III derived triple helical peptide

Released:
DOI: 10.2210/pdb4dmt/pdb
PDB entry 4dmt coloured by chain, front view.
PDB entry 4dmt coloured by chain, side view.
PDB entry 4dmt coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Implications for collagen I chain registry from the structure of the collagen von Willebrand factor A3 domain complex.
Brondijk TH, Bihan D, Farndale RW, Huizinga EG
Proc Natl Acad Sci U S A 109 5253-8 (2012)
PMID: 22440751

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-164397 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Collagen III derived peptide Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 32 amino acids
Theoretical weight: 2.86 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand GOL 4 x GOL
1 modified residue:
Ligand HYP 24 x HYP

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: P21
Unit cell:
a: 31.33Å b: 24.43Å c: 39.32Å
α: 90° β: 103.11° γ: 90°
R-values:
R R work R free
0.108 0.107 0.145
Expression system: Not provided

Quick links

Citations

7 review citations

von Willebrand factor, Jedi knight of the bloodstream.
Springer TA. (2014)
6 more

3 mentions without citation

Implications for collagen I chain registry from the structure of the collagen von Willebrand factor A3 domain complex.
Brondijk et al. (2012)
2 more