› 4dpv

X-ray diffraction
2.9Å resolution

PARVOVIRUS/DNA COMPLEX

Released:
DOI: 10.2210/pdb4dpv/pdb
PDB entry 4dpv coloured by chain, front view.
PDB entry 4dpv coloured by chain, side view.
PDB entry 4dpv coloured by chain, top view.
Source organism: Canine parvovirus
Primary publication:
Canine parvovirus capsid structure, analyzed at 2.9 A resolution.
Xie Q, Chapman MS
J Mol Biol 264 497-520 (1996)
PMID: 8969301

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
hetero 120-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-117337 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct DNA molecule
Macromolecules (2 distinct):
Capsid protein VP1 Chain: Z
Molecule details ›
Chain: Z
Length: 584 amino acids
Theoretical weight: 64.71 KDa
Source organism: Canine parvovirus
UniProt:
  • Canonical: P17455 (Residues: 144-727; Coverage: 80%)
Sequence domains: Parvovirus coat protein VP2
Structure domains: Parvovirus coat protein VP1/VP2
DNA (5'-D(*AP*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3') Chain: N
Molecule details ›
Chain: N
Length: 11 nucleotides
Theoretical weight: 3.28 KDa
Source organism: Canine parvovirus
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 4 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P21
Unit cell:
a: 263.21Å b: 349.01Å c: 267.32Å
α: 90° β: 90.82° γ: 90°
R-values:
R R work R free
not available not available 0.283
Expression system: Not provided

Quick links

Citations

9 review citations

How do animal DNA viruses get to the nucleus?
Kasamatsu et al. (1998)
8 more

15 mentions without citation

Twenty-Five Years of Structural Parvovirology.
Mietzsch et al. (2019)
14 more