› 4dwz

X-ray diffraction
2.7Å resolution

Crystal Structure of Ton_0340

Released:
DOI: 10.2210/pdb4dwz/pdb
PDB entry 4dwz coloured by chain, front view.
PDB entry 4dwz coloured by chain, side view.
PDB entry 4dwz coloured by chain, top view.
Source organism: Thermococcus onnurineus NA1
Primary publication:
Experimental phasing using zinc anomalous scattering.
Cha SS, An YJ, Jeong CS, Kim MK, Lee SG, Lee KH, Oh BH
Acta Crystallogr D Biol Crystallogr 68 1253-8 (2012)
PMID: 22948927

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-110409 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
D-glutamate cyclase-like C-terminal domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 269 amino acids
Theoretical weight: 29.11 KDa
Source organism: Thermococcus onnurineus NA1
Expression system: Escherichia coli
UniProt:
  • Canonical: B6YTD8 (Residues: 1-268; Coverage: 100%)
Gene name: TON_0340
Sequence domains: D-glutamate cyclase-like, C-terminal
Structure domains: TON_0340

Ligands and Environments

1 bound ligand:
Ligand ZN 38 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 4A
Spacegroup: P43212
Unit cell:
a: 107.442Å b: 107.442Å c: 355.031Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.223 0.223 0.27
Expression system: Escherichia coli

Quick links

Citations

15 citation in other articles

Structural basis of mammalian mucin processing by the human gut O-glycopeptidase OgpA from Akkermansia muciniphila.
Trastoy et al. (2020)
14 more