› 4efp

X-ray diffraction
1.33Å resolution

Bombyx mori lipoprotein 7 isolated from its natural source at 1.33 A resolution

Released:
DOI: 10.2210/pdb4efp/pdb
PDB entry 4efp coloured by chain, front view.
PDB entry 4efp coloured by chain, side view.
PDB entry 4efp coloured by chain, top view.
Source organism: Bombyx mori
Primary publication:
High-resolution structure of Bombyx mori lipoprotein 7: crystallographic determination of the identity of the protein and its potential role in detoxification.
Pietrzyk AJ, Panjikar S, Bujacz A, Mueller-Dieckmann J, Lochynska M, Jaskolski M, Bujacz G
Acta Crystallogr D Biol Crystallogr 68 1140-51 (2012)
PMID: 22948915

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122971 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
30kDa protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 239 amino acids
Theoretical weight: 27.58 KDa
Source organism: Bombyx mori
UniProt:
  • Canonical: E5EVW2 (Residues: 18-256; Coverage: 100%)
Gene name: 101735447
Sequence domains: Lepidopteran low molecular weight (30 kD) lipoprotein
Structure domains: Trefoil (Acidic Fibroblast Growth Factor, subunit A)

Ligands and Environments

6 bound ligands:
Ligand SCN 2 x SCN
Ligand CD 2 x CD
Ligand K 2 x K
Ligand EDO 4 x EDO
Ligand PGE 1 x PGE
Ligand PEG 1 x PEG
1 modified residue:
Ligand 0AF 2 x 0AF

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.1
Spacegroup: P1
Unit cell:
a: 42.211Å b: 49.993Å c: 55.244Å
α: 93.41° β: 94.7° γ: 102.78°
R-values:
R R work R free
0.184 0.184 0.231

Quick links

Citations

1 review citation

Detect, correct, retract: How to manage incorrect structural models.
Wlodawer et al. (2018)
4 other articles

3 mentions without citation

Two crystal structures of Bombyx mori lipoprotein 3 - structural characterization of a new 30-kDa lipoprotein family member.
Pietrzyk et al. (2013)
2 more