› 4egt

X-ray diffraction
2Å resolution

Crystal structure of major capsid protein P domain from rabbit hemorrhagic disease virus

Released:
DOI: 10.2210/pdb4egt/pdb
PDB entry 4egt coloured by chain, front view.
PDB entry 4egt coloured by chain, side view.
PDB entry 4egt coloured by chain, top view.
Source organism: Rabbit hemorrhagic disease virus
Primary publication:
Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography.
Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker TS, Schulten K, Zheng D, Pang H, Sun F
PLoS Pathog 9 e1003132 (2013)
PMID: 23341770

Function and Biology Details

Reaction catalysed: 
NTP + H(2)O = NDP + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-174561 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
p254 Chains: A, B
Molecule details ›
Chains: A, B
Length: 357 amino acids
Theoretical weight: 37.07 KDa
Source organism: Rabbit hemorrhagic disease virus
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q3HNQ2 (Residues: 1993-2344; Coverage: 15%)
Gene name: RHDV

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P212121
Unit cell:
a: 43.93Å b: 88.144Å c: 135.599Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.201 0.199 0.232
Expression system: Spodoptera frugiperda

Quick links

Citations

11 review citations

Enhanced sampling techniques in molecular dynamics simulations of biological systems.
Bernardi et al. (2015)
10 more

6 mentions without citation

Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography.
Wang et al. (2013)
5 more