4f5x

X-ray diffraction
5Å resolution

Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 960-mer (preferred)
PDBe Complex ID:
PDB-CPX-108267 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Inner capsid protein VP2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 880 amino acids
Theoretical weight: 102.6 KDa
Source organism: Bovine rotavirus A
UniProt:
  • Canonical: H9N1A6 (Residues: 1-880; Coverage: 100%)
Sequence domains: Rotavirus VP2 protein
Intermediate capsid protein VP6 Chains: C, D, E, F, G, H, I, J, K, L, M, N, O
Molecule details ›
Chains: C, D, E, F, G, H, I, J, K, L, M, N, O
Length: 397 amino acids
Theoretical weight: 44.92 KDa
Source organism: Bovine rotavirus strain NCDV/G6
UniProt:
  • Canonical: A7J3A1 (Residues: 1-397; Coverage: 100%)
Sequence domains: Rotavirus major capsid protein VP6
RNA-directed RNA polymerase Chain: W
Molecule details ›
Chain: W
Length: 1089 amino acids
Theoretical weight: 125.5 KDa
Source organism: Simian 11 rotavirus (serotype 3 / strain SA11-Patton)
UniProt:
  • Canonical: O37061 (Residues: 1-1088; Coverage: 100%)
Sequence domains:

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: P212121
Unit cell:
a: 740.75Å b: 1,198.07Å c: 1,345.41Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.293 0.293 0.296