4fi3

X-ray diffraction
3.47Å resolution

Structure of vitamin B12 transporter BtuCD-F in a nucleotide-bound state

Released:
Source organism: Escherichia coli K-12
Primary publication:
Structure of AMP-PNP-bound vitamin B12 transporter BtuCD-F.
Nature 490 367-72 (2012)
PMID: 23000901

Function and Biology Details

Reaction catalysed:
ATP + H(2)O + vitamin B12-[cobalamin-binding protein](Side 1) = ADP + phosphate + vitamin B12(Side 2) + [cobalamin-binding protein](Side 1)
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-139093 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Vitamin B12 import system permease protein BtuC Chains: A, B
Molecule details ›
Chains: A, B
Length: 349 amino acids
Theoretical weight: 37.65 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P06609 (Residues: 1-326; Coverage: 100%)
Gene names: JW1701, b1711, btuC
Sequence domains: FecCD transport family
Structure domains: ABC transporter involved in vitamin B12 uptake, BtuC
Vitamin B12 import ATP-binding protein BtuD Chains: C, D
Molecule details ›
Chains: C, D
Length: 249 amino acids
Theoretical weight: 27.09 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P06611 (Residues: 1-249; Coverage: 100%)
Gene names: JW1699, b1709, btuD
Sequence domains: ABC transporter
Structure domains: P-loop containing nucleotide triphosphate hydrolases
Vitamin B12-binding protein Chain: F
Molecule details ›
Chain: F
Length: 255 amino acids
Theoretical weight: 28.24 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P37028 (Residues: 22-266; Coverage: 100%)
Gene names: JW0154, b0158, btuF, yadT
Sequence domains: Periplasmic binding protein
Structure domains: Nitrogenase molybdenum iron protein domain

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: C2221
Unit cell:
a: 127.73Å b: 211.99Å c: 179.1Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.232 0.229 0.274
Expression system: Escherichia coli