› 4foz

X-ray diffraction
2.4Å resolution

Crystal Structure of OccD1 (OprD) Y282R/D307H

Released:
DOI: 10.2210/pdb4foz/pdb
PDB entry 4foz coloured by chain, front view.
PDB entry 4foz coloured by chain, side view.
PDB entry 4foz coloured by chain, top view.
Source organism: Pseudomonas aeruginosa PAO1
Primary publication:
Toward understanding the outer membrane uptake of small molecules by Pseudomonas aeruginosa.
Eren E, Parkin J, Adelanwa A, Cheneke B, Movileanu L, Khalid S, van den Berg B
J Biol Chem 288 12042-53 (2013)
PMID: 23467408

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-152432 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Porin D Chain: A
Molecule details ›
Chain: A
Length: 426 amino acids
Theoretical weight: 46.93 KDa
Source organism: Pseudomonas aeruginosa PAO1
Expression system: Escherichia coli
UniProt:
  • Canonical: P32722 (Residues: 24-443; Coverage: 100%)
Gene names: PA0958, oprD
Sequence domains: outer membrane porin, OprD family
Structure domains: Porin

Ligands and Environments

1 bound ligand:
Ligand C8E 9 x C8E
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: C2
Unit cell:
a: 148.458Å b: 104.764Å c: 47.355Å
α: 90° β: 98.55° γ: 90°
R-values:
R R work R free
0.199 0.197 0.239
Expression system: Escherichia coli

Quick links

Citations

6 review citations

ESKAPEing the labyrinth of antibacterial discovery.
Tommasi et al. (2015)
5 more

2 mentions without citation

Identifying New Substrates and Functions for an Old Enzyme: Calcineurin.
Roy et al. (2020)
1 more