› 4hif

X-ray diffraction
0.85Å resolution

Ultrahigh-resolution crystal structure of Z-DNA in complex with Zn2+ ions

Released:
DOI: 10.2210/pdb4hif/pdb
PDB entry 4hif coloured by chain, front view.
PDB entry 4hif coloured by chain, side view.
PDB entry 4hif coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions.
Drozdzal P, Gilski M, Kierzek R, Lomozik L, Jaskolski M
Acta Crystallogr D Biol Crystallogr 69 1180-90 (2013)
PMID: 23695262

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-117588 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand ZN 2 x ZN
Ligand CL 1 x CL
Ligand SPK 1 x SPK
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X11
Spacegroup: P212121
Unit cell:
a: 17.791Å b: 30.907Å c: 44.196Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.092 not available 0.113
Expression system: Not provided

Quick links

Citations

5 citation in other articles

Accurate geometrical restraints for Watson-Crick base pairs.
Gilski et al. (2019)
4 more

7 mentions without citation

Polarizable Force Field for DNA Based on the Classical Drude Oscillator: II. Microsecond Molecular Dynamics Simulations of Duplex DNA.
Lemkul et al. (2017)
6 more