› 4hpe

X-ray diffraction
2.38Å resolution

Crystal structure of a putative cell wall hydrolase (CD630_03720) from Clostridium difficile 630 at 2.38 A resolution

Released:
DOI: 10.2210/pdb4hpe/pdb
PDB entry 4hpe coloured by chain, front view.
PDB entry 4hpe coloured by chain, side view.
PDB entry 4hpe coloured by chain, top view.
Source organism: Clostridioides difficile 630
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172744 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NlpC/P60 domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 308 amino acids
Theoretical weight: 33.86 KDa
Source organism: Clostridioides difficile 630
Expression system: Escherichia coli
UniProt:
  • Canonical: Q18DB2 (Residues: 29-335; Coverage: 92%)
Gene name: CD630_03720
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CL 9 x CL
Ligand GOL 4 x GOL
2 modified residues:
Ligand MSE 36 x MSE
Ligand OCS 6 x OCS

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL12-2
Spacegroup: P1
Unit cell:
a: 65.522Å b: 101.211Å c: 101.436Å
α: 109.71° β: 108.86° γ: 101.36°
R-values:
R R work R free
0.176 0.175 0.211
Expression system: Escherichia coli

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