› 4ikb

X-ray diffraction
1.78Å resolution

Crystal structure of SNX11 PX domain

Released:
DOI: 10.2210/pdb4ikb/pdb
PDB entry 4ikb coloured by chain, front view.
PDB entry 4ikb coloured by chain, side view.
PDB entry 4ikb coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Xu J, Xu T, Liu J

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195295 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Sorting nexin-11 Chain: A
Molecule details ›
Chain: A
Length: 144 amino acids
Theoretical weight: 17.16 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9Y5W9 (Residues: 7-142; Coverage: 50%)
Gene name: SNX11
Sequence domains: PX domain
Structure domains: Phox-like domain
Sorting nexin-11 Chain: B
Molecule details ›
Chain: B
Length: 144 amino acids
Theoretical weight: 17.11 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9Y5W9 (Residues: 7-142; Coverage: 50%)
Gene name: SNX11
Sequence domains: PX domain
Structure domains: Phox-like domain

Ligands and Environments

4 bound ligands:
Ligand SO4 8 x SO4
Ligand PE5 5 x PE5
Ligand CL 3 x CL
Ligand NA 2 x NA
2 modified residues:
Ligand CAS 3 x CAS
Ligand SCS 1 x SCS

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P21
Unit cell:
a: 53.48Å b: 38.74Å c: 73.46Å
α: 90° β: 101.13° γ: 90°
R-values:
R R work R free
0.171 0.169 0.221
Expression system: Escherichia coli

Quick links