› 4j2o

X-ray diffraction
2.65Å resolution

Crystal structure of NADP-bound WbjB from A. baumannii community strain D1279779

Released:
DOI: 10.2210/pdb4j2o/pdb
PDB entry 4j2o coloured by chain, front view.
PDB entry 4j2o coloured by chain, side view.
PDB entry 4j2o coloured by chain, top view.
Source organism: Acinetobacter baumannii D1279779
Primary publication:
Crystal structure of a UDP-GlcNAc epimerase for surface polysaccharide biosynthesis in Acinetobacter baumannii.
Shah BS, Ashwood HE, Harrop SJ, Farrugia DN, Paulsen IT, Mabbutt BC
PLoS One 13 e0191610 (2018)
PMID: 29352301

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153403 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyrrhocoricin Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 363 amino acids
Theoretical weight: 41.63 KDa
Source organism: Acinetobacter baumannii D1279779
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P37362 (Residues: 2-16; Coverage: 75%)
Structure domains: NAD(P)-binding Rossmann-like Domain

Ligands and Environments

1 bound ligand:
Ligand NAP 6 x NAP
1 modified residue:
Ligand MSE 90 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX1
Spacegroup: P212121
Unit cell:
a: 107.93Å b: 114.54Å c: 215.15Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.162 0.16 0.202
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 citations in other articles

Insights into Acinetobacter baumannii fatty acid synthesis 3-oxoacyl-ACP reductases.
Cross et al. (2021)

2 mentions without citation

Giant virus Megavirus chilensis encodes the biosynthetic pathway for uncommon acetamido sugars.
Piacente et al. (2014)
1 more