› 4j73

X-ray diffraction
1.44Å resolution

Crystal structure of beta'-COP/p25 complex

Released:
DOI: 10.2210/pdb4j73/pdb
PDB entry 4j73 coloured by chain, front view.
PDB entry 4j73 coloured by chain, side view.
PDB entry 4j73 coloured by chain, top view.
Source organisms:
Primary publication:
Rules for the recognition of dilysine retrieval motifs by coatomer.
Ma W, Goldberg J
EMBO J 32 926-37 (2013)
PMID: 23481256

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-154456 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Coatomer subunit beta' Chain: A
Molecule details ›
Chain: A
Length: 301 amino acids
Theoretical weight: 34.29 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41811 (Residues: 1-301; Coverage: 34%)
Gene names: G2827, SEC27, YGL137W
Sequence domains: WD domain, G-beta repeat
Structure domains: YVTN repeat-like/Quinoprotein amine dehydrogenase
Transmembrane emp24 domain-containing protein 9 Chain: B
Molecule details ›
Chain: B
Length: 7 amino acids
Theoretical weight: 836 Da
Source organism: Bos taurus
Expression system: Not provided
UniProt:
  • Canonical: Q3T133 (Residues: 229-235; Coverage: 4%)
Gene name: TMED9

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-E
Spacegroup: P212121
Unit cell:
a: 36.295Å b: 56.696Å c: 132.352Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.177 0.201
Expression system: Not provided

Quick links

Citations

14 review citations

Formation of COPI-coated vesicles at a glance.
Arakel et al. (2018)
13 more

2 mentions without citation

Rules for the recognition of dilysine retrieval motifs by coatomer.
Ma et al. (2013)
1 more