› 4jrt

X-ray diffraction
2.6Å resolution

Crystal structure of an A-form RNA duplex containing three GU base pairs

Released:
DOI: 10.2210/pdb4jrt/pdb
PDB entry 4jrt coloured by chain, front view.
PDB entry 4jrt coloured by chain, side view.
PDB entry 4jrt coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of an A-form RNA duplex obtained by degradation of 6S RNA in a crystallization droplet.
Kondo J, Dock-Bregeon AC, Willkomm DK, Hartmann RK, Westhof E
Acta Crystallogr Sect F Struct Biol Cryst Commun 69 634-9 (2013)
PMID: 23722840

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196824 (preferred)
Entry contents:
2 distinct RNA molecules
Macromolecules (2 distinct):
RNA (5'-R(P*GP*GP*GP*UP*GP*GP*UP*GP*CP*GP*GP*G)-3') Chain: A
Molecule details ›
Chain: A
Length: 12 nucleotides
Theoretical weight: 3.98 KDa
Source organism: Synthetic construct
Expression system: Not provided
RNA (5'-R(P*CP*CP*UP*GP*CP*AP*CP*UP*GP*CP*CP*C)-3') Chain: B
Molecule details ›
Chain: B
Length: 12 nucleotides
Theoretical weight: 3.72 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P43
Unit cell:
a: 29.33Å b: 29.33Å c: 89.76Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.185 0.185 0.228
Expression system: Not provided

Quick links

Citations

3 review citations

Regulation of transcription by 6S RNAs: insights from the Escherichia coli and Bacillus subtilis model systems.
Steuten et al. (2014)
2 more

1 mention without citation

Structure of an A-form RNA duplex obtained by degradation of 6S RNA in a crystallization droplet.
Kondo et al. (2013)