› 4jun

X-ray diffraction
2.34Å resolution

Crystal structure of H5N1 influenza virus hemagglutinin, clade 5

Released:
DOI: 10.2210/pdb4jun/pdb
Model geometry
Fit model/data
PDB entry 4jun coloured by chain, front view.
PDB entry 4jun coloured by chain, side view.
PDB entry 4jun coloured by chain, top view.
Source organism: Influenza A virus (A/duck/Guangxi/2396/2004(H5N1))
Entry authors: DuBois RM, Zaraket H, Reddivari M, Coop T, Heath RJ, White SW, Russell CJ

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-173385 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Hemagglutinin Chains: A, C, E
Molecule details ›
Chains: A, C, E
Length: 329 amino acids
Theoretical weight: 36.9 KDa
Source organism: Influenza A virus (A/duck/Guangxi/2396/2004(H5N1))
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q2F4V6 (Residues: 17-339; Coverage: 57%)
Gene name: HA
Sequence domains: Haemagglutinin
Structure domains:
Hemagglutinin Chains: B, D, F
Molecule details ›
Chains: B, D, F
Length: 182 amino acids
Theoretical weight: 21.01 KDa
Source organism: Influenza A virus (A/duck/Guangxi/2396/2004(H5N1))
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q2F4V6 (Residues: 347-522; Coverage: 31%)
Gene name: HA
Sequence domains: Haemagglutinin
Structure domains: Hemagglutinin Ectodomain; Chain B

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
2 bound ligands:
Ligand NAG 3 x NAG
Ligand EPE 1 x EPE
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P21
Unit cell:
a: 73.036Å b: 237.056Å c: 72.857Å
α: 90° β: 119.18° γ: 90°
R-values:
R R work R free
0.232 0.201 0.245
Expression system: Spodoptera frugiperda

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