4juo

X-ray diffraction
6.53Å resolution

A low-resolution three-gate structure of topoisomerase IV from Streptococcus pneumoniae in space group H32

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
PDBe Complex ID:
PDB-CPX-117711 (preferred)
Entry contents:
2 distinct polypeptide molecules
4 distinct DNA molecules
Macromolecules (6 distinct):
DNA topoisomerase 4 subunit A Chain: A
Molecule details ›
Chain: A
Length: 496 amino acids
Theoretical weight: 56.46 KDa
Source organism: Streptococcus pneumoniae TIGR4
Expression system: Escherichia coli
UniProt:
  • Canonical: P72525 (Residues: 1-488; Coverage: 59%)
Gene names: SP_0855, parC
Sequence domains: DNA gyrase/topoisomerase IV, subunit A
DNA topoisomerase 4 subunit B Chain: C
Molecule details ›
Chain: C
Length: 670 amino acids
Theoretical weight: 74.53 KDa
Source organism: Streptococcus pneumoniae TIGR4
Expression system: Escherichia coli
UniProt:
  • Canonical: Q59961 (Residues: 1-647; Coverage: 100%)
Gene names: SP_0852, parE
Sequence domains:
E-site DNA Chain: E
Molecule details ›
Chain: E
Length: 11 nucleotides
Theoretical weight: 3.4 KDa
E-site DNA Chain: F
Molecule details ›
Chain: F
Length: 15 nucleotides
Theoretical weight: 4.54 KDa
E-site DNA Chain: G
Molecule details ›
Chain: G
Length: 11 nucleotides
Theoretical weight: 3.34 KDa
E-site DNA Chain: H
Molecule details ›
Chain: H
Length: 15 nucleotides
Theoretical weight: 4.6 KDa

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: R32
Unit cell:
a: 213.58Å b: 213.58Å c: 211.83Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.25 0.247 0.298
Expression system: Escherichia coli