› 4kjm

X-ray diffraction
2Å resolution

Crystal structure of the Staphylococcus aureus protein (NP_646141.1, domain 3912-4037) similar to streptococcal adhesins emb and ebhA/ebhB

Released:
DOI: 10.2210/pdb4kjm/pdb
PDB entry 4kjm coloured by chain, front view.
PDB entry 4kjm coloured by chain, side view.
PDB entry 4kjm coloured by chain, top view.
Source organism: Staphylococcus aureus subsp. aureus MW2
Entry authors: Cymborowski M, Shabalin IG, Joachimiak G, Chruszcz M, Gornicki P, Zhang R, Joachimiak A, Minor W, Midwest Center for Structural Genomics, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo dimer (preferred)
homo tetramer
Assembly name:
PDBe Complex ID:
PDB-CPX-185682 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Extracellular matrix-binding protein ebh Chains: A, B
Molecule details ›
Chains: A, B
Length: 129 amino acids
Theoretical weight: 13.62 KDa
Source organism: Staphylococcus aureus subsp. aureus MW2
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8NWQ6 (Residues: 3912-4037; Coverage: 1%)
Gene names: MW1324, ebh
Sequence domains: FIVAR domain
Structure domains: Immunoglobulin FC, subunit C

Ligands and Environments

4 bound ligands:
Ligand NA 2 x NA
Ligand CL 4 x CL
Ligand ZN 18 x ZN
Ligand ACT 1 x ACT
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P21212
Unit cell:
a: 50.783Å b: 59.23Å c: 88.186Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.188 0.185 0.23
Expression system: Escherichia coli

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