4mby

X-ray diffraction
1.48Å resolution

Structure of B-Lymphotropic Polyomavirus VP1 in complex with 3'-sialyllactose

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
PDBe Complex ID:
PDB-CPX-137319 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Major capsid protein VP1 Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 278 amino acids
Theoretical weight: 30.13 KDa
Source organism: B-lymphotropic polyomavirus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P04010 (Residues: 29-302; Coverage: 75%)
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

Carbohydrate polymer : NEW Components: GAL, SIA
Carbohydrate polymer : NEW Components: GAL, SIA, BGC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: C2
Unit cell:
a: 150.53Å b: 97.21Å c: 234.66Å
α: 90° β: 96.25° γ: 90°
R-values:
R R work R free
0.166 0.165 0.186
Expression system: Escherichia coli BL21(DE3)