› 4mcj

X-ray diffraction
2.4Å resolution

Crystal structure of a putative nucleoside deoxyribosyltransferase (BDI_0649) from Parabacteroides distasonis ATCC 8503 at 2.40 A resolution

Released:
DOI: 10.2210/pdb4mcj/pdb
PDB entry 4mcj coloured by chain, front view.
PDB entry 4mcj coloured by chain, side view.
PDB entry 4mcj coloured by chain, top view.
Source organism: Parabacteroides distasonis ATCC 8503
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107911 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside 2-deoxyribosyltransferase Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 154 amino acids
Theoretical weight: 18.19 KDa
Source organism: Parabacteroides distasonis ATCC 8503
Expression system: Escherichia coli
UniProt:
  • Canonical: A6L9R1 (Residues: 22-174; Coverage: 88%)
Gene name: BDI_0649
Sequence domains: Nucleoside 2-deoxyribosyltransferase like
Structure domains: Rossmann fold

Ligands and Environments

1 bound ligand:
Ligand CL 9 x CL
1 modified residue:
Ligand MSE 70 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: C2
Unit cell:
a: 323.85Å b: 65.629Å c: 102.71Å
α: 90° β: 90.48° γ: 90°
R-values:
R R work R free
0.186 0.185 0.212
Expression system: Escherichia coli

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