› 4mj9

X-ray diffraction
0.97Å resolution

lambda-[Ru(TAP)2(dppz-10-Me)]2+ bound to a synthetic DNA oligomer

Released:
DOI: 10.2210/pdb4mj9/pdb
PDB entry 4mj9 coloured by chain, front view.
PDB entry 4mj9 coloured by chain, side view.
PDB entry 4mj9 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru dppz Complexes to DNA
Hall JP, Beer H, Buchner K, Cardin DJ, Cardin CJ
Organometallics (2015)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-117854 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand 2J0 1 x 2J0
Ligand BA 1 x BA
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P43212
Unit cell:
a: 42.27Å b: 42.27Å c: 39.67Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.086 0.086 0.096
Expression system: Not provided

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