› 4mym

X-ray diffraction
1.9Å resolution

Crystal structure of a glyoxalase/ bleomycin resistance protein/ dioxygenase from Nocardioides

Released:
DOI: 10.2210/pdb4mym/pdb
PDB entry 4mym coloured by chain, front view.
PDB entry 4mym coloured by chain, side view.
PDB entry 4mym coloured by chain, top view.
Source organism: Nocardioides sp. JS614
Entry authors: Eswaramoorthy S, Chamala S, Evans B, Foti F, Gizzi A, Hillerich B, Kar A, Lafleur J, Seidel R, Villigas G, Zencheck W, AL Obaidi N, Almo SC, Swaminathan S, New York Structural Genomics Research Consortium (NYSGRC)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106698 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
VOC domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 176 amino acids
Theoretical weight: 19.77 KDa
Source organism: Nocardioides sp. JS614
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: A1SPF2 (Residues: 2-153; Coverage: 99%)
Gene name: Noca_4190
Sequence domains: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Structure domains: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1

Ligands and Environments

1 bound ligand:
Ligand BTB 1 x BTB
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: C2221
Unit cell:
a: 42.66Å b: 83.589Å c: 102.413Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.218 0.186 0.217
Expression system: Escherichia coli BL21

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