› 4nwv

X-ray diffraction
3.25Å resolution

Crystal structure of Orsay virus-like particle

Released:
DOI: 10.2210/pdb4nwv/pdb
PDB entry 4nwv coloured by chain, front view.
PDB entry 4nwv coloured by chain, side view.
PDB entry 4nwv coloured by chain, top view.
Source organism: Orsay virus
Primary publication:
Crystal structure of a nematode-infecting virus.
Guo YR, Hryc CF, Jakana J, Jiang H, Wang D, Chiu W, Zhong W, Tao YJ
Proc Natl Acad Sci U S A 111 12781-6 (2014)
PMID: 25136116

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-123174 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein alpha Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 391 amino acids
Theoretical weight: 42.98 KDa
Source organism: Orsay virus
Expression system: Escherichia coli
UniProt:
  • Canonical: E9KNV5 (Residues: 1-391; Coverage: 100%)
Sequence domains: nodavirus capsid protein
Structure domains: Jelly Rolls

Ligands and Environments

1 bound ligand:
Ligand CA 3 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-D
Spacegroup: I222
Unit cell:
a: 402.197Å b: 369.862Å c: 410.511Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.278 0.278 0.279
Expression system: Escherichia coli

Quick links

Citations

2 review citations

The Natural Biotic Environment of Caenorhabditis elegans.
Schulenburg et al. (2017)
1 more

6 mentions without citation

Crystal Structures of a Piscine Betanodavirus: Mechanisms of Capsid Assembly and Viral Infection.
Chen et al. (2015)
5 more