4odl

X-ray diffraction
2.92Å resolution

Structure of SlyD from Thermus thermophilus in complex with S2 peptide

Released:

Function and Biology Details

Reaction catalysed:
Peptidylproline (omega=180) = peptidylproline (omega=0)
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-141629 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Peptidyl-prolyl cis-trans isomerase Chains: A, B
Molecule details ›
Chains: A, B
Length: 158 amino acids
Theoretical weight: 17.4 KDa
Source organism: Thermus thermophilus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5SLE7 (Residues: 1-149; Coverage: 100%)
Gene name: TTHA0346
Sequence domains: FKBP-type peptidyl-prolyl cis-trans isomerase
Structure domains: Chitinase A; domain 3
Small ribosomal subunit protein uS2 Chains: C, D, E, F
Molecule details ›
Chains: C, D, E, F
Length: 16 amino acids
Theoretical weight: 1.86 KDa
Source organism: Escherichia coli K-12
Expression system: Not provided
UniProt:
  • Canonical: P0A7V0 (Residues: 20-34; Coverage: 6%)
Gene names: JW0164, b0169, rpsB

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P6222
Unit cell:
a: 110.88Å b: 110.88Å c: 182.31Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.211 0.21 0.224
Expression systems:
  • Escherichia coli
  • Not provided