› 4ofp

X-ray diffraction
3Å resolution

Crystal Structure of SYG-2 D3-D4

Released:
DOI: 10.2210/pdb4ofp/pdb
PDB entry 4ofp coloured by chain, front view.
PDB entry 4ofp coloured by chain, side view.
PDB entry 4ofp coloured by chain, top view.
Source organism: Caenorhabditis elegans
Primary publication:
Extracellular architecture of the SYG-1/SYG-2 adhesion complex instructs synaptogenesis.
Özkan E, Chia PH, Wang RR, Goriatcheva N, Borek D, Otwinowski Z, Walz T, Shen K, Garcia KC
Cell 156 482-94 (2014)
PMID: 24485456

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-193604 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Synaptogenesis protein syg-2 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 208 amino acids
Theoretical weight: 22.96 KDa
Source organism: Caenorhabditis elegans
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q9U3P2 (Residues: 231-430; Coverage: 16%)
Gene names: C26G2.1, syg-2
Sequence domains: Immunoglobulin domain
Structure domains: Immunoglobulins

Ligands and Environments

1 bound ligand:
Ligand NAG 6 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: P43212
Unit cell:
a: 121.24Å b: 121.24Å c: 178.16Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.244 0.242 0.283
Expression system: Trichoplusia ni

Quick links

Citations

16 review citations

Mechanisms of myoblast fusion during muscle development.
Kim et al. (2015)
15 more

1 mention without citation

Synthetic nucleotides as probes of DNA polymerase specificity.
Walsh et al. (2012)