4ofw

X-ray diffraction
2.3Å resolution

Crystal Structure of Arabidopsis thaliana DJ-1d

Released:

Function and Biology Details

Reaction catalysed:
(R)-S-lactoylglutathione = glutathione + methylglyoxal
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192381 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein DJ-1 homolog D Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 387 amino acids
Theoretical weight: 41.64 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9M8R4 (Residues: 3-388; Coverage: 100%)
Gene names: At3g02720, DJ1D, F13E7.34
Sequence domains: DJ-1/PfpI family
Structure domains: Rossmann fold

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-1A
Spacegroup: P21
Unit cell:
a: 105.556Å b: 115.047Å c: 115.531Å
α: 90° β: 91.51° γ: 90°
R-values:
R R work R free
0.243 0.243 0.284
Expression system: Escherichia coli