› 4po4

X-ray diffraction
2.5Å resolution

Crystal Structure of Lampetra planeri VLRC

Released:
DOI: 10.2210/pdb4po4/pdb
PDB entry 4po4 coloured by chain, front view.
PDB entry 4po4 coloured by chain, side view.
PDB entry 4po4 coloured by chain, top view.
Source organism: Lampetra planeri
Primary publication:
Selection of the lamprey VLRC antigen receptor repertoire.
Holland SJ, Gao M, Hirano M, Iyer LM, Luo M, Schorpp M, Cooper MD, Aravind L, Mariuzza RA, Boehm T
Proc Natl Acad Sci U S A 111 14834-9 (2014)
PMID: 25228760

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-100689 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
LRRNT domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 221 amino acids
Theoretical weight: 24.65 KDa
Source organism: Lampetra planeri
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A088STQ5 (Residues: 25-245; Coverage: 73%)
Sequence domains: Leucine rich repeat

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P21
Unit cell:
a: 59.319Å b: 59.542Å c: 66.324Å
α: 90° β: 108.35° γ: 90°
R-values:
R R work R free
0.213 0.211 0.249
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

9 review citations

Evolution of Alternative Adaptive Immune Systems in Vertebrates.
Boehm et al. (2018)
8 more

5 mentions without citation

Selection of the lamprey VLRC antigen receptor repertoire.
Holland et al. (2014)
4 more