› 4q2s

X-ray diffraction
1.35Å resolution

Crystal Structure of S. pombe Pdc1 Ge1 Domain

Released:
DOI: 10.2210/pdb4q2s/pdb
PDB entry 4q2s coloured by chain, front view.
PDB entry 4q2s coloured by chain, side view.
PDB entry 4q2s coloured by chain, top view.
Source organism: Schizosaccharomyces pombe 972h-
Primary publication:
In vitro reconstitution of a cellular phase-transition process that involves the mRNA decapping machinery.
Fromm SA, Kamenz J, Nöldeke ER, Neu A, Zocher G, Sprangers R
Angew Chem Int Ed Engl 53 7354-9 (2014)
PMID: 24862735

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126932 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Enhancer of mRNA-decapping protein 4-like protein pdc1 Chain: A
Molecule details ›
Chain: A
Length: 143 amino acids
Theoretical weight: 16.24 KDa
Source organism: Schizosaccharomyces pombe 972h-
Expression system: Escherichia coli
UniProt:
  • Canonical: O13892 (Residues: 932-1070; Coverage: 13%)
Gene names: SPAC20G4.08, SPAC4F10.01, pdc1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P21212
Unit cell:
a: 47.33Å b: 77.84Å c: 36.51Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.187 0.185 0.212
Expression system: Escherichia coli

Quick links

Citations

31 review citations

Biomolecular condensates: organizers of cellular biochemistry.
Banani et al. (2017)
30 more

1 mention without citation

In vitro reconstitution of a cellular phase-transition process that involves the mRNA decapping machinery.
Fromm et al. (2014)