› 4r0f

X-ray diffraction
1.94Å resolution

Structure of Lysozyme Dimer at 318K

Released:
DOI: 10.2210/pdb4r0f/pdb
PDB entry 4r0f coloured by chain, front view.
PDB entry 4r0f coloured by chain, side view.
PDB entry 4r0f coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation.
Sharma P, Verma N, Singh PK, Korpole S
Sci Rep 6 22475 (2016)
PMID: 26926993

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chains: A, B
Molecule details ›
Chains: A, B
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

1 bound ligand:
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: P21212
Unit cell:
a: 104.628Å b: 66.491Å c: 31.654Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.202 0.2 0.239

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Citations

7 citation in other articles

Anti-Candida albicans effect of the protein-carbohydrate fraction obtained from the coelomic fluid of earthworm Dendrobaena veneta.
Fiołka et al. (2019)
6 more

4 mentions without citation

Protein structure determination by electron diffraction using a single three-dimensional nanocrystal.
Clabbers et al. (2017)
3 more