› 4r8j

X-ray diffraction
1.21Å resolution

d(TCGGCGCCGA) with lambda-[Ru(TAP)2(dppz)]2+ soaked in D2O

Released:
DOI: 10.2210/pdb4r8j/pdb
PDB entry 4r8j coloured by chain, front view.
PDB entry 4r8j coloured by chain, side view.
PDB entry 4r8j coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy.
Hall JP, Poynton FE, Keane PM, Gurung SP, Brazier JA, Cardin DJ, Winter G, Gunnlaugsson T, Sazanovich IV, Towrie M, Cardin CJ, Kelly JM, Quinn SJ
Nat Chem 7 961-7 (2015)
PMID: 26587711

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-118083 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*(THM)P*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 2.97 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

4 bound ligands:
Ligand BA 1 x BA
Ligand RKL 1 x RKL
Ligand CL 1 x CL
Ligand DOD 73 x DOD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P43212
Unit cell:
a: 42.37Å b: 42.37Å c: 39.42Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.11 0.109 0.125
Expression system: Not provided

Quick links

Citations

1 review citation

The development of ruthenium(ii) polypyridyl complexes and conjugates for in vitro cellular and in vivo applications.
Poynton et al. (2017)
32 other articles