› 4rf7

X-ray diffraction
2.1Å resolution

Crystal structure of double-domain arginine kinase from Anthopleura japonicas in complex with substrate L-arginine

Released:
DOI: 10.2210/pdb4rf7/pdb
PDB entry 4rf7 coloured by chain, front view.
PDB entry 4rf7 coloured by chain, side view.
PDB entry 4rf7 coloured by chain, top view.
Source organism: Anthopleura japonica
Primary publication:
Structure of a double-domain phosphagen kinase reveals an asymmetric arrangement of the tandem domains.
Wang Z, Qiao Z, Ye S, Zhang R
Acta Crystallogr D Biol Crystallogr 71 779-89 (2015)
PMID: 25849389

Function and Biology Details

Reaction catalysed: 
ATP + L-arginine = ADP + N(omega)-phospho-L-arginine
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-127556 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Arginine kinase Chains: A, B
Molecule details ›
Chains: A, B
Length: 718 amino acids
Theoretical weight: 80.44 KDa
Source organism: Anthopleura japonica
Expression system: Escherichia coli
UniProt:
  • Canonical: O15992 (Residues: 1-715; Coverage: 100%)
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand ACT 8 x ACT
Ligand ARG 6 x ARG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007
Spacegroup: P21
Unit cell:
a: 78.5Å b: 59.271Å c: 162.256Å
α: 90° β: 91.31° γ: 90°
R-values:
R R work R free
0.182 0.18 0.218
Expression system: Escherichia coli

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Citations

1 review citation

Natural Products Containing 'Rare' Organophosphorus Functional Groups.
Petkowski et al. (2019)
1 other article