› 4rl8

X-ray diffraction
2.3Å resolution

Crystal structure of the COG4313 outer membrane channel from Pseudomonas putida F1

Released:
DOI: 10.2210/pdb4rl8/pdb
PDB entry 4rl8 coloured by chain, front view.
PDB entry 4rl8 coloured by chain, side view.
PDB entry 4rl8 coloured by chain, top view.
Source organism: Pseudomonas putida F1
Primary publication:
Crystal structure of a COG4313 outer membrane channel.
van den Berg B, Bhamidimarri SP, Winterhalter M
Sci Rep 5 11927 (2015)
PMID: 26149193

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107767 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein involved in meta-pathway of phenol degradation-like protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 275 amino acids
Theoretical weight: 30.47 KDa
Source organism: Pseudomonas putida F1
Expression system: Escherichia coli
UniProt:
  • Canonical: A5W3Z9 (Residues: 21-288; Coverage: 100%)
Gene name: Pput_2725
Sequence domains: Putative MetA-pathway of phenol degradation

Ligands and Environments

2 bound ligands:
Ligand C8E 28 x C8E
Ligand PO4 1 x PO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: P212121
Unit cell:
a: 101.051Å b: 120.309Å c: 131.396Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.215 0.213 0.253
Expression system: Escherichia coli

Quick links

Citations

8 citation in other articles

Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope.
Geisinger et al. (2020)
7 more

6 mentions without citation

Ecology and Biogenesis of Functional Amyloids in Pseudomonas.
Rouse et al. (2018)
5 more