› 4ryk

X-ray diffraction
2.09Å resolution

Crystal structure of a putative transcriptional regulator from Listeria monocytogenes EGD-e

Released:
DOI: 10.2210/pdb4ryk/pdb
PDB entry 4ryk coloured by chain, front view.
PDB entry 4ryk coloured by chain, side view.
PDB entry 4ryk coloured by chain, top view.
Source organism: Listeria monocytogenes EGD-e
Entry authors: Filippova EV, Wawrzak Z, Minasov G, Kiryukhina O, Jedrzejczak R, Joachimiak A, Anderson WF, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-187024 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
HTH cro/C1-type domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 306 amino acids
Theoretical weight: 36.84 KDa
Source organism: Listeria monocytogenes EGD-e
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8YA39 (Residues: 1-300; Coverage: 100%)
Gene name: lmo0325
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: GLC, FRU
Carbohydrate polymer
2 bound ligands:
Ligand TLA 1 x TLA
Ligand PEG 1 x PEG
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: I212121
Unit cell:
a: 86.31Å b: 103.93Å c: 112.81Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.169 0.168 0.199
Expression system: Escherichia coli

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