› 4ryv

X-ray diffraction
1.38Å resolution

Crystal structure of yellow lupin LLPR-10.1A protein in complex with trans-zeatin

Released:
DOI: 10.2210/pdb4ryv/pdb
PDB entry 4ryv coloured by chain, front view.
PDB entry 4ryv coloured by chain, side view.
PDB entry 4ryv coloured by chain, top view.
Source organism: Lupinus luteus
Primary publication:
Crystallographic and CD probing of ligand-induced conformational changes in a plant PR-10 protein.
Śliwiak J, Dolot R, Michalska K, Szpotkowski K, Bujacz G, Sikorski M, Jaskolski M
J Struct Biol 193 55-66 (2016)
PMID: 26644353

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-156634 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein LlR18A Chain: A
Molecule details ›
Chain: A
Length: 155 amino acids
Theoretical weight: 16.75 KDa
Source organism: Lupinus luteus
Expression system: Escherichia coli
UniProt:
  • Canonical: P52778 (Residues: 2-156; Coverage: 99%)
Gene name: LLR18A
Sequence domains: Pathogenesis-related protein Bet v 1 family
Structure domains: Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4

Ligands and Environments

2 bound ligands:
Ligand ZEA 5 x ZEA
Ligand SO4 1 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: MAX II BEAMLINE I711
Spacegroup: C2
Unit cell:
a: 70.97Å b: 63.91Å c: 47.56Å
α: 90° β: 126.68° γ: 90°
R-values:
R R work R free
0.143 0.142 0.17
Expression system: Escherichia coli

Quick links

Citations

5 citation in other articles

Probing the conformational changes and peroxidase-like activity of cytochrome c upon interaction with iron nanoparticles.
Jafari Azad et al. (2017)
4 more

1 mention without citation

Features and Possible Applications of Plant Lipid-Binding and Transfer Proteins.
Melnikova et al. (2022)